vit_explainability

LinearModelPytorchWrapper(backbone, linear_classifier, example_input, device)

Bases: Module

Pytorch wrapper for scikit-learn linear models.

Parameters:

• backbone (Module) –

  Backbone

• linear_classifier (LinearClassifierMixin) –

  ScikitLearn linear classifier model

• example_input (Tensor) –

  Input example needed to obtain output shape

• device (device) –

  The device to use. Defaults to "cpu"

Source code in quadra/utils/vit_explainability.py

def __init__(
    self,
    backbone: torch.nn.Module,
    linear_classifier: LinearClassifierMixin,
    example_input: torch.Tensor,
    device: torch.device,
):
    super().__init__()
    self.device = device
    self.backbone = backbone.to(device)
    if not isinstance(linear_classifier, LinearClassifierMixin):
        raise TypeError("Classifier is not of type LinearClassifierMixin.")
    self.num_classes = len(linear_classifier.classes_)
    self.linear_classifier = linear_classifier
    with torch.no_grad():
        output = self.backbone(example_input.to(device))
        num_filters = output.shape[-1]

    self.classifier = torch.nn.Linear(num_filters, self.num_classes).to(device)
    self.classifier.weight.data = torch.from_numpy(linear_classifier.coef_).float()
    self.classifier.bias.data = torch.from_numpy(linear_classifier.intercept_).float()

VitAttentionGradRollout(model, attention_layer_names=None, discard_ratio=0.9, classifier=None, example_input=None)

Attention gradient rollout class. Constructor registers hooks to the model's specified layers. Only 4 layers by default given the high load on gpu. Best gradcams obtained using all blocks.

Parameters:

• model (Module) –

  Pytorch model

• attention_layer_names (Optional[List[str]], default: None ) –

  On which layers to register the hooks

• discard_ratio (float, default: 0.9 ) –

  Percentage of elements to discard

• classifier (Optional[LinearClassifierMixin], default: None ) –

  Scikit-learn classifier. Leave it to None if model already has a classifier on top.

Source code in quadra/utils/vit_explainability.py

def __init__(  # pylint: disable=W0102
    self,
    model: torch.nn.Module,
    attention_layer_names: Optional[List[str]] = None,
    discard_ratio: float = 0.9,
    classifier: Optional[LinearClassifierMixin] = None,
    example_input: Optional[torch.Tensor] = None,
):
    if attention_layer_names is None:
        attention_layer_names = [
            "blocks.6.attn.attn_drop",
            "blocks.7.attn.attn_drop",
            "blocks.10.attn.attn_drop",
            "blocks.11.attn.attn_drop",
        ]

    if classifier is not None:
        if example_input is None:
            raise ValueError(
                "Must provide an input example to LinearModelPytorchWrapper when classifier is not None"
            )
        self.model = LinearModelPytorchWrapper(
            backbone=model,
            linear_classifier=classifier,
            example_input=example_input,
            device=next(model.parameters()).device,
        )
    else:
        self.model = model  # type: ignore[assignment]

    self.discard_ratio = discard_ratio
    self.f_hook_handles: List[torch.utils.hooks.RemovableHandle] = []
    self.b_hook_handles: List[torch.utils.hooks.RemovableHandle] = []
    for name, module in self.model.named_modules():
        for layer_name in attention_layer_names:
            if layer_name in name:
                self.f_hook_handles.append(module.register_forward_hook(self.get_attention))
                self.b_hook_handles.append(module.register_backward_hook(self.get_attention_gradient))
    self.attentions: List[torch.Tensor] = []
    self.attention_gradients: List[torch.Tensor] = []
    # Activate gradients
    blocks_list = [x.split("blocks")[1].split(".attn")[0] for x in attention_layer_names]
    for name, module in model.named_modules():
        for p in module.parameters():
            if "blocks" in name and any(x in name for x in blocks_list):
                p.requires_grad = True

__call__(input_tensor, targets_list)

Called when the class instance is used as a function.

Parameters:

• input_tensor (Tensor) –

  Model's input tensor

• targets_list (List[int]) –

  List of targets. If None, argmax is used

Returns:

• out ( ndarray ) –

  Batch of output masks

Source code in quadra/utils/vit_explainability.py

def __call__(self, input_tensor: torch.Tensor, targets_list: List[int]) -> np.ndarray:
    """Called when the class instance is used as a function.

    Args:
        input_tensor: Model's input tensor
        targets_list: List of targets. If None, argmax is used

    Returns:
        out: Batch of output masks
    """
    self.attentions.clear()
    self.attention_gradients.clear()

    self.model.zero_grad(set_to_none=True)
    self.model.to(input_tensor.device)
    output = self.model(input_tensor).cpu()

    class_mask = torch.zeros(output.shape)
    if targets_list is None:
        targets_list = output.argmax(dim=1)
    class_mask[torch.arange(output.shape[0]), targets_list] = 1
    loss = (output * class_mask).sum()
    loss.backward()
    out = grad_rollout(
        self.attentions,
        self.attention_gradients,
        self.discard_ratio,
        aspect_ratio=(input_tensor.shape[-1] / input_tensor.shape[-2]),
    )

    return out

get_attention(module, inpt, out)

Hook to return attention.

Parameters:

• module (Module) –

  Torch module

• inpt (Tensor) –

  Input tensor

• out (Tensor) –

  Output tensor, in this case the attention

Source code in quadra/utils/vit_explainability.py

def get_attention(
    self, module: torch.nn.Module, inpt: torch.Tensor, out: torch.Tensor  # pylint: disable=W0613
) -> None:
    """Hook to return attention.

    Args:
        module: Torch module
        inpt: Input tensor
        out: Output tensor, in this case the attention
    """
    self.attentions.append(out.detach().clone().cpu())

get_attention_gradient(module, grad_input, grad_output)

Hook to return attention.

Parameters:

• module (Module) –

  Torch module

• grad_input (Tensor) –

  Gradients' input tensor

• grad_output (Tensor) –

  Gradients' output tensor, in this case the attention

Source code in quadra/utils/vit_explainability.py

def get_attention_gradient(
    self, module: torch.nn.Module, grad_input: torch.Tensor, grad_output: torch.Tensor  # pylint: disable=W0613
) -> None:
    """Hook to return attention.

    Args:
        module: Torch module
        grad_input: Gradients' input tensor
        grad_output: Gradients' output tensor, in this case the attention
    """
    self.attention_gradients.append(grad_input[0].detach().clone().cpu())

VitAttentionRollout(model, attention_layer_names=None, head_fusion='mean', discard_ratio=0.9)

Attention gradient rollout class. Constructor registers hooks to the model's specified layers. Only 4 layers by default given the high load on gpu. Best gradcams obtained using all blocks.

Parameters:

• model (Module) –

  Model

• attention_layer_names (Optional[List[str]], default: None ) –

  On which layers to register the hook

• head_fusion (str, default: 'mean' ) –

  Strategy of fusion for attention heads

• discard_ratio (float, default: 0.9 ) –

  Percentage of elements to discard

Source code in quadra/utils/vit_explainability.py

def __init__(
    self,
    model: torch.nn.Module,
    attention_layer_names: Optional[List[str]] = None,
    head_fusion: str = "mean",
    discard_ratio: float = 0.9,
):
    if attention_layer_names is None:
        attention_layer_names = [
            "blocks.6.attn.attn_drop",
            "blocks.7.attn.attn_drop",
            "blocks.10.attn.attn_drop",
            "blocks.11.attn.attn_drop",
        ]
    self.model = model
    self.head_fusion = head_fusion
    self.discard_ratio = discard_ratio
    self.f_hook_handles: List[torch.utils.hooks.RemovableHandle] = []
    for name, module in self.model.named_modules():
        for layer_name in attention_layer_names:
            if layer_name in name:
                self.f_hook_handles.append(module.register_forward_hook(self.get_attention))
    self.attentions: List[torch.Tensor] = []

__call__(input_tensor)

Called when the class instance is used as a function.

Parameters:

• input_tensor (Tensor) –

  Input tensor

Returns:

• out ( ndarray ) –

  Batch of output masks

Source code in quadra/utils/vit_explainability.py

def __call__(self, input_tensor: torch.Tensor) -> np.ndarray:
    """Called when the class instance is used as a function.

    Args:
        input_tensor: Input tensor

    Returns:
        out: Batch of output masks
    """
    self.attentions.clear()
    with torch.no_grad():
        self.model(input_tensor)
    out = rollout(
        self.attentions,
        self.discard_ratio,
        self.head_fusion,
        aspect_ratio=(input_tensor.shape[-1] / input_tensor.shape[-2]),
    )

    return out

get_attention(module, inpt, out)

Hook to return attention.

Parameters:

• module (Module) –

  Torch module

• inpt (Tensor) –

  Input tensor

• out (Tensor) –

  Output tensor, in this case the attention

Source code in quadra/utils/vit_explainability.py

def get_attention(
    self, module: torch.nn.Module, inpt: torch.Tensor, out: torch.Tensor  # pylint: disable=W0613
) -> None:
    """Hook to return attention.

    Args:
        module: Torch module
        inpt: Input tensor
        out: Output tensor, in this case the attention
    """
    self.attentions.append(out.detach().clone().cpu())

grad_rollout(attentions, gradients, discard_ratio=0.9, aspect_ratio=1.0)

Apply gradient rollout on Attention matrices.

Parameters:

• attentions (List[Tensor]) –

  Attention matrices

• gradients (List[Tensor]) –

  Target class gradient matrices

• discard_ratio (float, default: 0.9 ) –

  Percentage of elements to discard

• aspect_ratio (float, default: 1.0 ) –

  Model inputs' width divided by height

Returns:

• mask ( ndarray ) –

  Output mask, still needs a resize

Source code in quadra/utils/vit_explainability.py

def grad_rollout(
    attentions: List[torch.Tensor], gradients: List[torch.Tensor], discard_ratio: float = 0.9, aspect_ratio: float = 1.0
) -> np.ndarray:
    """Apply gradient rollout on Attention matrices.

    Args:
        attentions: Attention matrices
        gradients: Target class gradient matrices
        discard_ratio: Percentage of elements to discard
        aspect_ratio: Model inputs' width divided by height

    Returns:
        mask: Output mask, still needs a resize
    """
    result = torch.eye(attentions[0].size(-1))
    with torch.no_grad():
        for attention, grad in zip(attentions, gradients):
            weights = grad
            attention_heads_fused = torch.mean((attention * weights), dim=1)
            attention_heads_fused[attention_heads_fused < 0] = 0
            # Drop the lowest attentions, but
            # don't drop the class token
            flat = attention_heads_fused.view(attention_heads_fused.size(0), -1)
            _, indices = flat.topk(int(flat.size(-1) * discard_ratio), -1, False)
            flat.scatter_(-1, indices, 0)
            I = torch.eye(attention_heads_fused.size(-1))
            a = (attention_heads_fused + 1.0 * I) / 2
            a = a / a.sum(dim=-1).unsqueeze(1)
            result = torch.matmul(a, result)
    # Look at the total attention between the class token,
    # and the image patches
    mask = result[:, 0, 1:]
    batch_size = mask.size(0)
    # TODO: Non squared input-size handling can be improved. Not easy though
    height = math.floor((mask.size(-1) / aspect_ratio) ** 0.5)
    total_size = mask.size(-1)
    width = math.floor(total_size / height)
    if mask.size(-1) > (height * width):
        to_remove = mask.size(-1) - (height * width)
        mask = mask[:, :-to_remove]
    mask = mask.reshape(batch_size, height, width).numpy()
    mask = mask / mask.max(axis=(1, 2), keepdims=True)

    return mask

rollout(attentions, discard_ratio=0.9, head_fusion='mean', aspect_ratio=1.0)

Apply rollout on Attention matrices.

Parameters:

• attentions (List[Tensor]) –

  List of Attention matrices coming from different blocks

• discard_ratio (float, default: 0.9 ) –

  Percentage of elements to discard

• head_fusion (str, default: 'mean' ) –

  Strategy of fusion of attention heads

• aspect_ratio (float, default: 1.0 ) –

  Model inputs' width divided by height

Returns:

• mask ( ndarray ) –

  Output mask, still needs a resize

Source code in quadra/utils/vit_explainability.py

def rollout(
    attentions: List[torch.Tensor], discard_ratio: float = 0.9, head_fusion: str = "mean", aspect_ratio: float = 1.0
) -> np.ndarray:
    """Apply rollout on Attention matrices.

    Args:
        attentions: List of Attention matrices coming from different blocks
        discard_ratio: Percentage of elements to discard
        head_fusion: Strategy of fusion of attention heads
        aspect_ratio: Model inputs' width divided by height

    Returns:
        mask: Output mask, still needs a resize
    """
    result = torch.eye(attentions[0].size(-1))
    with torch.no_grad():
        for attention in attentions:
            if head_fusion == "mean":
                attention_heads_fused = attention.mean(dim=1)
            elif head_fusion == "max":
                attention_heads_fused = attention.max(dim=1)[0]
            elif head_fusion == "min":
                attention_heads_fused = attention.min(dim=1)[0]
            else:
                raise ValueError("Attention head fusion type Not supported")
            # Drop the lowest attentions, but
            # don't drop the class token
            flat = attention_heads_fused.view(attention_heads_fused.size(0), -1)
            _, indices = flat.topk(int(flat.size(-1) * discard_ratio), -1, False)
            flat.scatter_(-1, indices, 0)
            I = torch.eye(attention_heads_fused.size(-1))
            a = (attention_heads_fused + 1.0 * I) / 2
            a = a / a.sum(dim=-1).unsqueeze(1)
            result = torch.matmul(a, result)
    # Look at the total attention between the class token and the image patches
    mask = result[:, 0, 1:]
    batch_size = mask.size(0)
    # TODO: Non squared input-size handling can be improved. Not easy though
    height = math.floor((mask.size(-1) / aspect_ratio) ** 0.5)
    total_size = mask.size(-1)
    width = math.floor(total_size / height)
    if mask.size(-1) > (height * width):
        to_remove = mask.size(-1) - (height * width)
        mask = mask[:, :-to_remove]
    mask = mask.reshape(batch_size, height, width).numpy()
    mask = mask / mask.max(axis=(1, 2), keepdims=True)

    return mask